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Cell Research | APC C-terminal 11 amino acids target PTPN13 to inhibit STAT1 dephosphorylation and enhance CRC immunotherapy

Cell Research | APC C-terminal 11 amino acids target PTPN13 to inhibit STAT1 dephosphorylation and enhance CRC immunotherapy
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This study reveals the critical role of the APC mutation-PTPN13-STAT1 signaling axis in CRC immune escape and develops an effective C-terminal 11-amino-acid peptide (APC11) to restore antitumor immunity. The study also demonstrates that combining APC11 with PD1 blockade significantly enhances the effectiveness of immunotherapy, offering a novel therapeutic strategy for CRC patients.

 

Literature Overview

The article titled 'Targeting PTPN13 with 11-amino-acid peptides of C-terminal APC prevents immune evasion of colorectal cancer', published in Cell Research, reviews how APC gene mutations in colorectal cancer (CRC) contribute to immune evasion and how this process can be blocked using an 11-amino-acid peptide from the C-terminal region of APC (APC11). The study found that APC regulates the phosphorylation status of STAT1 by binding to PTPN13, thereby affecting the IFNγ-STAT1-IRF1-MHC I antigen-presentation pathway. Loss of APC allows PTPN13 to dephosphorylate STAT1, reducing CD8+ T cell infiltration and downregulating antigen presentation, enabling CRC to escape immune surveillance. The APC11 peptide competitively binds to PTPN13, restoring STAT1 phosphorylation and antigen presentation, thereby enhancing antitumor immunity. When combined with PD1 blockade, this therapeutic strategy shows improved antitumor efficacy in CRC models.

Background Knowledge

Colorectal cancer (CRC) is the third most common cancer globally, with approximately 80%-90% of cases harboring mutations in the APC gene. Currently, immune checkpoint blockade therapy is effective only in CRC patients with high microsatellite instability (MSI-H), while the majority of microsatellite-stable (MSS) patients do not respond to PD1/PD-L1 inhibition. Therefore, understanding the mechanisms by which APC mutations drive immune evasion in CRC and developing new therapeutic approaches are key scientific challenges. This study identifies PTPN13 as a critical regulator of immune evasion induced by APC loss through CRISPR screening and multiple animal models. Structural biology analyses further revealed that the C-terminal region of APC directly binds to the PDZ2a domain of PTPN13, leading to the development of the APC11 peptide targeting this interaction. The research not only uncovers a novel immunomodulatory mechanism but also provides a new drug target for CRC therapy.

 

 

Research Methods and Experiments

This study employed multiple experimental approaches, including CRISPR/Cas9 screening, genetically engineered mouse models, immunohistochemical analysis, flow cytometry, immunofluorescence, RNA sequencing, gene set enrichment analysis (GSEA), MHC-I antigen presentation assays, protein interaction analysis (co-IP, GST-pull down, CUT&Tag), SPR binding analysis, and in vivo tumor implantation models. The research team generated intestinal organoids with mutations in Apc, p53, and Kras in mouse models and evaluated their tumor-forming capabilities in both immunocompetent and immunodeficient mice. Furthermore, clinical data from CRC patients (TCGA, MSKCC cohorts) were used to analyze correlations between APC mutations and immune signatures. By synthesizing various lengths of APC C-terminal peptides and employing SPR analysis, the APC11 peptide (11 amino acids at the C-terminus) was identified as having the highest binding affinity to PTPN13. The antitumor effects of APC11 were then evaluated in CRC models.

Key Conclusions and Perspectives

  • Loss of APC significantly suppresses CD8+ T cell infiltration and promotes immune escape in CRC.
  • PTPN13 inhibits the IFNγ-STAT1-IRF1-MHC I signaling axis by dephosphorylating STAT1, thereby reducing antigen presentation.
  • APC directly binds to the PDZ2a domain of PTPN13 at its C-terminus, blocking PTPN13’s dephosphorylation activity.
  • The APC11 peptide competitively binds to PTPN13, restoring STAT1 phosphorylation, IRF1 expression, and MHC-I antigen presentation.
  • In multiple CRC mouse models, APC11 significantly enhances the efficacy of anti-PD1 therapy, improving antitumor immune surveillance.
  • Clinical data show that CRC patients with APC mutations exhibit higher PTPN13 expression, reduced CD8+ infiltration, and worse prognosis.

Research Significance and Prospects

This study identifies the APC-PTPN13-STAT1 signaling axis as a key regulator of immune escape in CRC, offering a new therapeutic strategy for patients with APC mutations. The APC11 peptide represents a promising foundation for drug development, capable of restoring antigen presentation and CD8+ T cell infiltration to improve immunotherapy response. Future studies may focus on optimizing the pharmacokinetics and targeted delivery of APC11 to evaluate its translational potential in combination immunotherapy for CRC. Additionally, this mechanism may apply to other APC mutation-associated cancers, such as breast and gastric cancers, providing a theoretical basis for cross-cancer immunotherapy.

 

 

Conclusion

APC mutations are common in colorectal cancer (CRC) and their loss not only promotes tumorigenesis but also facilitates immune escape through PTPN13-mediated STAT1 dephosphorylation. This study is the first to demonstrate that the C-terminal 11 amino acids of APC (APC11) bind to PTPN13, restoring STAT1 phosphorylation and MHC-I antigen presentation, thereby enhancing CD8+ T cell infiltration and improving the efficacy of PD1 blockade. These findings offer a new therapeutic target and a potential drug development strategy for CRC patients, particularly those with microsatellite-stable (MSS) tumors who currently lack effective immunotherapy options. Future research into this mechanism may accelerate the development of PTPN13-targeting peptide-based therapeutics and open new avenues for immunotherapy in CRC and other APC mutation-associated cancers.

 

Reference:
Wen-Hui Ma, Wen-Yi Li, Tao Chen, Guoxin Li, and Wei-Jie Zhou. Targeting PTPN13 with 11-amino-acid peptides of C-terminal APC prevents immune evasion of colorectal cancer. Cell Research.
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